From 2417a6b7603524dc5cd30d29b153f91024b9443d Mon Sep 17 00:00:00 2001
From: Mitja Felicijan <mitja.felicijan@gmail.com>
Date: Wed, 1 Nov 2023 22:54:27 +0100
Subject: Move to Jekyll

---
 static/posts/dna-sequence/benchmarks.csv         |    7 -
 static/posts/dna-sequence/chart-size.py          |   28 -
 static/posts/dna-sequence/chart-size.svg         | 1553 ----------------------
 static/posts/dna-sequence/chart-speed.py         |   23 -
 static/posts/dna-sequence/chart-speed.svg        | 1416 --------------------
 static/posts/dna-sequence/dna-basics.jpg         |  Bin 165883 -> 0 bytes
 static/posts/dna-sequence/quote.png              |  Bin 1068 -> 0 bytes
 static/posts/dna-sequence/sample-binary-file.png |  Bin 66417 -> 0 bytes
 static/posts/dna-sequence/sample.png             |  Bin 65930 -> 0 bytes
 9 files changed, 3027 deletions(-)
 delete mode 100644 static/posts/dna-sequence/benchmarks.csv
 delete mode 100644 static/posts/dna-sequence/chart-size.py
 delete mode 100644 static/posts/dna-sequence/chart-size.svg
 delete mode 100644 static/posts/dna-sequence/chart-speed.py
 delete mode 100644 static/posts/dna-sequence/chart-speed.svg
 delete mode 100755 static/posts/dna-sequence/dna-basics.jpg
 delete mode 100755 static/posts/dna-sequence/quote.png
 delete mode 100755 static/posts/dna-sequence/sample-binary-file.png
 delete mode 100755 static/posts/dna-sequence/sample.png

(limited to 'static/posts/dna-sequence')

diff --git a/static/posts/dna-sequence/benchmarks.csv b/static/posts/dna-sequence/benchmarks.csv
deleted file mode 100644
index 8645d5e..0000000
--- a/static/posts/dna-sequence/benchmarks.csv
+++ /dev/null
@@ -1,7 +0,0 @@
-Packages,Encode to FASTA (ms),FASTA file size (KB),FASTA gzipped (KB)
-1KB,5.625224,4.1,1.4
-10KB,32.679975,40.7,13
-100KB,112.864416,406.7,121
-1MB,872.887675,4100,1200
-10MB,8472.693202,40700,12000
-100MB,85525.178217,406700,118000
diff --git a/static/posts/dna-sequence/chart-size.py b/static/posts/dna-sequence/chart-size.py
deleted file mode 100644
index 4fc408d..0000000
--- a/static/posts/dna-sequence/chart-size.py
+++ /dev/null
@@ -1,28 +0,0 @@
-import csv
-
-import matplotlib.pyplot as plt
-import pandas as pd
-
-# Read the data
-df = pd.read_csv("benchmarks.csv")
-
-# Settings
-plt.title("Encode to FASTA out filesize")
-plt.tight_layout(pad=2)
-fig = plt.gcf()
-fig.set_size_inches(10, 4)
-
-# Plotting
-plt.plot(df["Packages"], df["FASTA file size (KB)"], label = "Raw", color="black", linestyle="-")
-plt.plot(df["Packages"], df["FASTA gzipped (KB)"], label = "Gzipped", color="black", linestyle="--")
-
-# Adding x and y axis labels
-plt.xlabel("Size of an input file", fontstyle="italic")
-plt.ylabel("File size (KB)", fontstyle="italic")
-
-# Legend
-legend = plt.legend()
-legend.get_frame().set_linewidth(0)
-
-# Export as SVG
-plt.savefig("chart-size.svg", format="svg")
diff --git a/static/posts/dna-sequence/chart-size.svg b/static/posts/dna-sequence/chart-size.svg
deleted file mode 100644
index 1a2d127..0000000
--- a/static/posts/dna-sequence/chart-size.svg
+++ /dev/null
@@ -1,1553 +0,0 @@
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diff --git a/static/posts/dna-sequence/chart-speed.py b/static/posts/dna-sequence/chart-speed.py
deleted file mode 100644
index c07b057..0000000
--- a/static/posts/dna-sequence/chart-speed.py
+++ /dev/null
@@ -1,23 +0,0 @@
-import csv
-
-import matplotlib.pyplot as plt
-import pandas as pd
-
-# Read the data
-df = pd.read_csv("benchmarks.csv")
-
-# Settings
-plt.title("Encode to FASTA speed over time")
-plt.tight_layout(pad=2)
-fig = plt.gcf()
-fig.set_size_inches(10, 4)
-
-# Plotting
-plt.plot(df["Packages"], df["Encode to FASTA (ms)"], label = "ALB", color="black", linestyle="--")
-
-# Adding x and y axis labels
-plt.xlabel("Size of an input file", fontstyle="italic")
-plt.ylabel("Encoding time (ms)", fontstyle="italic")
-
-# Export as SVG
-plt.savefig("chart-speed.svg", format="svg")
diff --git a/static/posts/dna-sequence/chart-speed.svg b/static/posts/dna-sequence/chart-speed.svg
deleted file mode 100644
index 7bb0c29..0000000
--- a/static/posts/dna-sequence/chart-speed.svg
+++ /dev/null
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