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authorMitja Felicijan <mitja.felicijan@gmail.com>2020-03-25 05:35:39 +0100
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1~ title: Simple IOT application supported by real-time monitoring and data history
2~ description: Develop simple IOT application with Arduino MKR1000 and Python
3~ slug: /experiments/simple-iot-application.html
4~ date: 2017-08-11
5~ template: post
6~ hide: false
7
8## Initial thoughts
9
10I have been developing these kind of application for the better part of my last 5 years and people keep asking me how to approach developing such application and I will give a try explaining it here.
11
12IOT applications are really no different than any other kind of applications. We have data that needs to be collected and visualized in some form of tables or charts. The main difference here is that most of the times these data is collected by some kind of device foreign to developer that mainly operates in web domain. But fear not, it's not that different than writing some JavaScript.
13
14There are many devices able to transmit data via wireless or wired network by default but for the sake of example we will be using commonly known Arduino with wireless module already on the board → [Arduino MKR1000](https://store.arduino.cc/arduino-mkr1000).
15
16In order to make this little project as accessible to others as possible I will try to make it as inexpensive as possible. And by this I mean that I will avoid using hosted virtual servers and will be using my own laptop as a server. But you must buy Arduino MKR1000 to follow steps below. But if you would want to deploy this software I would suggest using [DigitalOcean](https://www.digitalocean.com) → smallest VPS is only per month making this one of the most affordable option out there. Please notice that this software will not run on stock web hosting that only supports LAMP (Linux, Apache, MySQL, and PHP).
17
18_But before we begin please take notice that this is strictly experimental code and not well optimized and there are much better ways in handling some aspects of the application but that requires much deeper knowledge of technology that is not needed for an example like this._
19
20**Development steps**
21
221. Simple Python API that will receive and store incoming data.
232. Prototype C++ code that will read "sensor data" and transmit it to API.
243. Data visualization with charts → extends Python web application.
25
26Step 1. and 3. will share the same web application. One route will be dedicated to API and another to serving HTML with chart.
27
28Schema below represents what we will try to achieve and how different parts correlates to each other.
29
30![Overview](/assets/iot-application/simple-iot-application-overview.svg)
31
32## Simple Python API
33
34I have always been a fan of simplicity so we will be using [Bottle: Python Web Framework](https://bottlepy.org/docs/dev/). It is a single file web framework that seriously simplifies working with routes, templating and has built-in web server that satisfies our need in this case.
35
36First we need to install bottle package. This can be done by downloading ```bottle.py``` and placing it in the root of your application or by using pip software ```pip install bottle --user```.
37
38If you are using Linux or MacOS then Python is already installed. If you will try to test this on Windows please install [Python for Windows](https://www.python.org/downloads/windows/). There may be some problems with path when you will try to launch ```python webapp.py``` so please take care of this before you continue.
39
40### Basic web application
41
42Most basic bottle application is quite simple. Paste code below in ```webapp.py``` file and save.
43
44```python
45# -*- coding: utf-8 -*-
46
47import bottle
48
49# initializing bottle app
50app = bottle.Bottle()
51
52# triggered when / is accessed from browser
53# only accepts GET → no POST allowed
54@app.route("/", method=["GET"])
55def route_default():
56 return "howdy from python"
57
58# starting server on http://0.0.0.0:5000
59if __name__ == "__main__":
60 bottle.run(
61 app = app,
62 host = "0.0.0.0",
63 port = 5000,
64 debug = True,
65 reloader = True,
66 catchall = True,
67 )
68```
69
70To run this simple application you should open command prompt or terminal on your machine and go to the folder containing your file and type ```python webapp.py```. If everything goes ok then open your web browser and point it to ```http://0.0.0.0:5000```.
71
72If you would like change the port of your application (like port 80) and not use root to run your app this will present a problem. The TCP/IP port numbers below 1024 are privileged ports → this is a security feature. So in order of simplicity and security use a port number above 1024 like I have used port 5000.
73
74If this fails at any time please fix it before you continue, because nothing below will work otherwise.
75
76We use 0.0.0.0 as default host so that this app is available over your local network. If you find your local ip ```ifconfig``` and try accessing this site with your phone (if on same network/router as your machine) this should work as well (example of such ip ```http://192.168.1.15:5000```). This is a must have because Arduino will be accessing this application to send it's data.
77
78### Web application security
79
80There is a lot to be said about security and is a topic of many books. Of course all this can not be written here but to just establish some basic security → you should always use SSL with your application. Some fantastic free certificates are available by [Let's Encrypt - Free SSL/TLS Certificates](https://letsencrypt.org). With SSL certificate installed you should then make use of HTTP headers and send your "API key" via a header. If your key is send via header then this key is encrypted by SSL and send encrypted over the network. Never send your api keys by GET parameter like ```http://example.com/?api_key=somekeyvalue```. The problem that this kind of sending presents is that this key is visible in logs and by network sniffers.
81
82There is a fantastic article describing some aspects about security: [11 Web Application Security Best Practices](https://www.keycdn.com/blog/web-application-security-best-practices/). Please check it out.
83
84### Simple API for writing data-points
85
86We will now be using boilerplate code from example above and extend it to be able to write data received by API to local storage. For example use I will use SQLite3 because it plays well with Python and can store quite large amount of data. I have been using it to collect gigabytes of data in a single database without any corruption or problems → your experience may vary.
87
88To avoid learning SQLite I will be using [Dataset: databases for lazy people](https://dataset.readthedocs.io/en/latest/index.html). This package abstracts SQL and simplifies writing and reading data from database. You should install this package with pip software ```pip install dataset --user```.
89
90Because API will use POST method I will be testing if code works correctly by using [Restlet Client for Google Chrome](https://chrome.google.com/webstore/detail/restlet-client-rest-api-t/aejoelaoggembcahagimdiliamlcdmfm). This software also allows you to set headers → for basic security with API_KEY.
91
92To quickly generate passwords or API keys I usually use this nifty website [RandomKeygen](https://randomkeygen.com/).
93
94Copy and paste code below over your previous code in file ```webapp.py```.
95
96```python
97# -*- coding: utf-8 -*-
98
99import time
100import bottle
101import random
102import dataset
103
104# initializing bottle app
105app = bottle.Bottle()
106
107# connects to sqlite database
108# check_same_thread=False allows using it in multi-threaded mode
109app.config["dsn"] = dataset.connect("sqlite:///data.db?check_same_thread=False")
110
111# api key that will be used in Arduino code
112app.config["api_key"] = "JtF2aUE5SGHfVJBCG5SH"
113
114# triggered when /api is accessed from browser
115# only accepts POST → no GET allowed
116@app.route("/api", method=["POST"])
117def route_default():
118 status = 400
119 ts = int(time.time()) # current timestamp
120 value = bottle.request.body.read() # data from device
121 api_key = bottle.request.get_header("Api_Key") # api key from header
122
123 # outputs to console received data for debug reason
124 print ">>> {} :: {}".format(value, api_key)
125
126 # if api_key is correct and value is present
127 # then writes attribute to point table
128 if api_key == app.config["api_key"] and value:
129 app.config["dsn"]["point"].insert(dict(ts=ts, value=value))
130 status = 200
131
132 # we only need to return status
133 return bottle.HTTPResponse(status=status, body="")
134
135# starting server on http://0.0.0.0:5000
136if __name__ == "__main__":
137 bottle.run(
138 app = app,
139 host = "0.0.0.0",
140 port = 5000,
141 debug = True,
142 reloader = True,
143 catchall = True,
144 )
145```
146
147To run this simply go to folder containing python file and run ```python webapp.py``` from terminal. If everything goes ok you should have simple API available via POST method on /api route.
148
149After testing the service with Restlet Client you should be able to view your data in a database file ```data.db```.
150
151![REST settings example](/assets/iot-application/iot-rest-example.png)
152
153You can also check the contents of new database file by using desktop client for SQLite → [DB Browser for SQLite](http://sqlitebrowser.org/).
154
155![SQLite database example](/assets/iot-application/iot-sqlite-db.png)
156
157Table structure is as simple as it can be. We have ts (timestamp) and value (value from Arduino). As you can see timestamp is generated on API side. If you would happen to have atomic clock on Arduino it would be then better to generate and send timestamp with the value. This would be particularity useful if we would be collecting sensor data at a higher frequency and then sending this data in bulk to API.
158
159If you will deploy this app with uWSGI and multi-threaded, use DSN (Data Source Name) url with ```?check_same_thread=False```.
160
161Ok, now that we have some sort of a working API with some basic security so unwanted people can not post data to your database can we proceed further and try to program Arduino to send data to API.
162
163## Sending data to API with Arduino MKR1000
164
165First of all you should have MKR1000 module and microUSB cable to proceed. If you have ever done any work with Arduino you should know that you also need [Arduino IDE](https://www.arduino.cc/en/Main/Software). On provided link you should be able to download and install IDE. Once that task is completed and you have successfully run blink example you should proceed to the next step.
166
167In order to use wireless capabilities of MKR1000 you need to first install [WiFi101 library](https://www.arduino.cc/en/Reference/WiFi101) in Arduino IDE. Please check before you install, you may already have it installed.
168
169Code below is a working example that sends data to API. Before you try to test your code make sure you have run Python web application. Then change settings for wifi, api endpoint and api_key. If by some reason code bellow doesn't work for you please leave a comment and I'll try to help.
170
171Once you have opened IDE and copied this code try to compile and upload it. Then open "Serial monitor" to see if any output is presented by Arduino.
172
173```c
174#include <WiFi101.h>
175
176// wifi settings
177char ssid[] = "ssid-name";
178char pass[] = "ssid-password";
179
180// api server enpoint
181char server[] = "192.168.6.22";
182int port = 5000;
183
184// api key that must be the same as the one in Python code
185String api_key = "JtF2aUE5SGHfVJBCG5SH";
186
187// frequency data is sent in ms - every 5 seconds
188int timeout = 1000 * 5;
189
190int status = WL_IDLE_STATUS;
191
192void setup() {
193
194 // initialize serial and wait for port to open:
195 Serial.begin(9600);
196 delay(1000);
197
198 // check for the presence of the shield
199 if (WiFi.status() == WL_NO_SHIELD) {
200 Serial.println("WiFi shield not present");
201 while (true);
202 }
203
204 // attempt to connect to wifi network
205 while (status != WL_CONNECTED) {
206 Serial.print("Attempting to connect to SSID: ");
207 Serial.println(ssid);
208 status = WiFi.begin(ssid, pass);
209 // wait 10 seconds for connection
210 delay(10000);
211 }
212
213 // output wifi status to serial monitor
214 Serial.print("SSID: ");
215 Serial.println(WiFi.SSID());
216
217 IPAddress ip = WiFi.localIP();
218 Serial.print("IP Address: ");
219 Serial.println(ip);
220
221 long rssi = WiFi.RSSI();
222 Serial.print("signal strength (RSSI):");
223 Serial.print(rssi);
224 Serial.println(" dBm");
225}
226
227void loop() {
228
229 WiFiClient client;
230
231 if (client.connect(server, port)) {
232
233 // I use random number generator for this example
234 // but you can use analog or digital inputs from arduino
235 String content = String(random(1000));
236
237 client.println("POST /api HTTP/1.1");
238 client.println("Connection: close");
239 client.println("Api-Key: " + api_key);
240 client.println("Content-Length: " + String(content.length()));
241 client.println();
242 client.println(content);
243
244 delay(100);
245 client.stop();
246 Serial.println("Data sent successfully ...");
247
248 } else {
249 Serial.println("Problem sending data ...");
250 }
251
252 // waits for x seconds and continue looping
253 delay(timeout);
254
255}
256```
257
258As seen from example you can notice that Arduino is generating random integer between [ 0 .. 1000 ]. You can easily replace this with a temperature sensor or any other kind of sensor.
259
260Now that we have API under the hood and Arduino is sending demo data we can now focus on data visualization.
261
262## Data visualization
263
264Before we continue we should examine our project folder structure. Currently we only have two files in our project:
265
266_simple-iot-app/_
267
268* _webapp.py_
269* _data.db_
270
271We will now add HTML template that will contain CSS and JavaScript code inline for the simplicity reason. And for the bottle framework to be able to scan root application folder for templates we will add ```bottle.TEMPLATE_PATH.insert(0, "./")``` in ```webapp.py```. By default bottle framework uses ```views/``` subfolder to store templates. This is not the ideal situation and if you will use bottle to develop web applications you should use native behavior and store templates in it's predefined folder. But for the sake of example we will over-ride this. Be careful to fully replace your code with new code that is provided below. Avoid partially replacing code in file :) Also new code for reading data-points is provided in Python example below.
272
273First we add new route to our web application. It should be trigger when browser hits root of application ```http://0.0.0.0:5000/```. This route will do nothing more than render ```frontend.html``` template. This is done by ```return bottle.template("frontend.html")```. Check code below to further examine how exactly this is done.
274
275Now we will expand ```/api``` route and use different methods to write or read data-points. For writing data-point we will use POST method and for reading points we will use GET method. GET method will return JSON object with latest readings and historical data.
276
277There is a fantastic JavaScript library for plotting time-series charts called [MetricsGraphics.js](https://www.metricsgraphicsjs.org) that is based on [D3.js](https://d3js.org/) library for visualizing data.
278
279Data schema required by MetricsGraphics.js → to achieve this we need to transform data from database into this format:
280
281```json
282[
283 {
284 "date": "2017-08-11 01:07:20",
285 "value": 933
286 },
287 {
288 "date": "2017-08-11 01:07:30",
289 "value": 743
290 }
291]
292```
293
294Web application is now complete and we only need ```frontend.html``` that we will develop now. If you would try to start web app now and go to root app this will return error because we don't have frontend.html yet.
295
296```python
297# -*- coding: utf-8 -*-
298
299import time
300import bottle
301import json
302import datetime
303import random
304import dataset
305
306# initializing bottle app
307app = bottle.Bottle()
308
309# adds root directory as template folder
310bottle.TEMPLATE_PATH.insert(0, "./")
311
312# connects to sqlite database
313# check_same_thread=False allows using it in multi-threaded mode
314app.config["db"] = dataset.connect("sqlite:///data.db?check_same_thread=False")
315
316# api key that will be used in Arduino code
317app.config["api_key"] = "JtF2aUE5SGHfVJBCG5SH"
318
319# triggered when / is accessed from browser
320# only accepts GET → no POST allowed
321@app.route("/", method=["GET"])
322def route_default():
323 return bottle.template("frontend.html")
324
325# triggered when /api is accessed from browser
326# accepts POST and GET
327@app.route("/api", method=["GET", "POST"])
328def route_default():
329
330 # if method is POST then we write datapoint
331 if bottle.request.method == "POST":
332 status = 400
333 ts = int(time.time()) # current timestamp
334 value = bottle.request.body.read() # data from device
335 api_key = bottle.request.get_header("Api-Key") # api key from header
336
337 # outputs to console recieved data for debug reason
338 print ">>> {} :: {}".format(value, api_key)
339
340 # if api_key is correct and value is present
341 # then writes attribute to point table
342 if api_key == app.config["api_key"] and value:
343 app.config["db"]["point"].insert(dict(ts=ts, value=value))
344 status = 200
345
346 # we only need to return status
347 return bottle.HTTPResponse(status=status, body="")
348
349 # if method is GET then we read datapoint
350 else:
351 response = []
352 datapoints = app.config["db"]["point"].all()
353
354 for point in datapoints:
355 response.append({
356 "date": datetime.datetime.fromtimestamp(int(point["ts"])).strftime("%Y-%m-%d %H:%M:%S"),
357 "value": point["value"]
358 })
359
360 bottle.response.content_type = "application/json"
361 return json.dumps(response)
362
363# starting server on http://0.0.0.0:5000
364if __name__ == "__main__":
365 bottle.run(
366 app = app,
367 host = "0.0.0.0",
368 port = 5000,
369 debug = True,
370 reloader = True,
371 catchall = True,
372 )
373```
374
375And now finally we can implement ```frontend.html```. Create file with this name and copy code below. When you are done you can start web application. Steps for this part are listed below the code.
376
377```html
378<!DOCTYPE html>
379<html>
380
381 <head>
382 <meta charset="utf-8">
383 <title>Simple IOT application</title>
384 </head>
385
386 <body>
387
388 <h1>Simple IOT application</h1>
389
390 <div class="chart-placeholder">
391 <div id="chart"></div>
392 </div>
393
394 <!-- application main script -->
395 <script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.2.1/jquery.min.js"></script>
396 <script src="https://cdnjs.cloudflare.com/ajax/libs/d3/4.10.0/d3.min.js"></script>
397 <script src="https://cdnjs.cloudflare.com/ajax/libs/metrics-graphics/2.11.0/metricsgraphics.min.js"></script>
398 <script>
399 function fetch_and_render() {
400 d3.json("/api", function(data) {
401 data = MG.convert.date(data, "date", "%Y-%m-%d %H:%M:%S");
402 MG.data_graphic({
403 data: data,
404 chart_type: "line",
405 full_width: true,
406 height: 270,
407 target: document.getElementById("chart"),
408 x_accessor: "date",
409 y_accessor: "value"
410 });
411 });
412 }
413 window.onload = function() {
414 // initial call for rendering
415 fetch_and_render();
416
417 // updates chart every 5 seconds
418 setInterval(function() {
419 fetch_and_render();
420 }, 5000);
421 }
422 </script>
423
424 <!-- application styles -->
425 <style>
426 body {
427 font: 13px sans-serif;
428 padding: 20px 50px;
429 }
430 .chart-placeholder {
431 border: 2px solid #ccc;
432 width: 100%;
433 user-select: none;
434 }
435 /* chart styles */
436 .mg-line1-color {
437 stroke: red;
438 stroke-width: 2;
439 }
440 .mg-main-area, .mg-main-line {
441 fill: #fff;
442 }
443 .mg-x-axis line, .mg-y-axis line {
444 stroke: #b3b2b2;
445 stroke-width: 1px;
446 }
447 </style>
448
449 </body>
450
451</html>
452```
453
454Now the folder structure should look like:
455
456_simple-iot-app/_
457
458* _webapp.py_
459* _data.db_
460* _frontend.html_
461
462Ok, lets now start application and start feeding it data.
463
4641. ```python webapp.py```
4652. connect Arduino MKR1000 to power source
4663. open browser and go to ```http://0.0.0.0:5000```
467
468If everything goes well you should be seeing new data-points rendered on chart every 5 seconds.
469
470If you navigate to ```http://0.0.0.0:5000``` you should see rendered chart as shown on picture below.
471
472![Application output](/assets/iot-application/iot-app-output.png)
473
474Complete application with all the code is available for [download](/assets/iot-application/simple-iot-application.zip).
475
476## Conclusion
477
478I hope this clarifies some aspects of IOT application development. Of course this is a minimal example and is far from what can be done in real life with some further dive into other technologies.
479
480If you would like to continue exploring IOT world here are some interesting resources for you to examine:
481
482* [Reading Sensors with an Arduino](https://www.allaboutcircuits.com/projects/reading-sensors-with-an-arduino/)
483* [MQTT 101 – How to Get Started with the lightweight IoT Protocol](http://www.hivemq.com/blog/how-to-get-started-with-mqtt)
484* [Stream Updates with Server-Sent Events](https://www.html5rocks.com/en/tutorials/eventsource/basics/)
485* [Internet of Things (IoT) Tutorials](http://www.tutorialspoint.com/internet_of_things/)
486
487Any comment or additional ideas are welcomed in comments below.