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authorMitja Felicijan <m@mitjafelicijan.com>2023-08-05 13:41:36 +0200
committerMitja Felicijan <m@mitjafelicijan.com>2023-08-05 13:41:36 +0200
commit057be23acf19acae0683c59b0a346b411a04880a (patch)
tree852fcf2ca92060b2e70401df446b572b7fd8d874 /static
parent2f5ea5f4982d6276881c9a3342ed8847ebc7d326 (diff)
downloadmitjafelicijan.com-057be23acf19acae0683c59b0a346b411a04880a.tar.gz
Cleanup of posts
Diffstat (limited to 'static')
-rw-r--r--static/posts/dna-sequence/benchmarks.csv7
-rwxr-xr-xstatic/posts/dna-sequence/benchmarks.odsbin21911 -> 0 bytes
-rw-r--r--static/posts/dna-sequence/chart-1.pngbin64760 -> 0 bytes
-rw-r--r--static/posts/dna-sequence/chart-2.pngbin74241 -> 0 bytes
-rwxr-xr-xstatic/posts/dna-sequence/chart-encoding-speed.pngbin14201 -> 0 bytes
-rwxr-xr-xstatic/posts/dna-sequence/chart-file-sizes.pngbin12391 -> 0 bytes
-rw-r--r--static/posts/dna-sequence/chart-size.py28
-rw-r--r--static/posts/dna-sequence/chart-size.svg1553
-rw-r--r--static/posts/dna-sequence/chart-speed.py23
-rw-r--r--static/posts/dna-sequence/chart-speed.svg1416
10 files changed, 3027 insertions, 0 deletions
diff --git a/static/posts/dna-sequence/benchmarks.csv b/static/posts/dna-sequence/benchmarks.csv
new file mode 100644
index 0000000..8645d5e
--- /dev/null
+++ b/static/posts/dna-sequence/benchmarks.csv
@@ -0,0 +1,7 @@
1Packages,Encode to FASTA (ms),FASTA file size (KB),FASTA gzipped (KB)
21KB,5.625224,4.1,1.4
310KB,32.679975,40.7,13
4100KB,112.864416,406.7,121
51MB,872.887675,4100,1200
610MB,8472.693202,40700,12000
7100MB,85525.178217,406700,118000
diff --git a/static/posts/dna-sequence/benchmarks.ods b/static/posts/dna-sequence/benchmarks.ods
deleted file mode 100755
index 62a8e30..0000000
--- a/static/posts/dna-sequence/benchmarks.ods
+++ /dev/null
Binary files differ
diff --git a/static/posts/dna-sequence/chart-1.png b/static/posts/dna-sequence/chart-1.png
deleted file mode 100644
index c017e43..0000000
--- a/static/posts/dna-sequence/chart-1.png
+++ /dev/null
Binary files differ
diff --git a/static/posts/dna-sequence/chart-2.png b/static/posts/dna-sequence/chart-2.png
deleted file mode 100644
index 80b922b..0000000
--- a/static/posts/dna-sequence/chart-2.png
+++ /dev/null
Binary files differ
diff --git a/static/posts/dna-sequence/chart-encoding-speed.png b/static/posts/dna-sequence/chart-encoding-speed.png
deleted file mode 100755
index 7fb106d..0000000
--- a/static/posts/dna-sequence/chart-encoding-speed.png
+++ /dev/null
Binary files differ
diff --git a/static/posts/dna-sequence/chart-file-sizes.png b/static/posts/dna-sequence/chart-file-sizes.png
deleted file mode 100755
index 31bfa66..0000000
--- a/static/posts/dna-sequence/chart-file-sizes.png
+++ /dev/null
Binary files differ
diff --git a/static/posts/dna-sequence/chart-size.py b/static/posts/dna-sequence/chart-size.py
new file mode 100644
index 0000000..4fc408d
--- /dev/null
+++ b/static/posts/dna-sequence/chart-size.py
@@ -0,0 +1,28 @@
1import csv
2
3import matplotlib.pyplot as plt
4import pandas as pd
5
6# Read the data
7df = pd.read_csv("benchmarks.csv")
8
9# Settings
10plt.title("Encode to FASTA out filesize")
11plt.tight_layout(pad=2)
12fig = plt.gcf()
13fig.set_size_inches(10, 4)
14
15# Plotting
16plt.plot(df["Packages"], df["FASTA file size (KB)"], label = "Raw", color="black", linestyle="-")
17plt.plot(df["Packages"], df["FASTA gzipped (KB)"], label = "Gzipped", color="black", linestyle="--")
18
19# Adding x and y axis labels
20plt.xlabel("Size of an input file", fontstyle="italic")
21plt.ylabel("File size (KB)", fontstyle="italic")
22
23# Legend
24legend = plt.legend()
25legend.get_frame().set_linewidth(0)
26
27# Export as SVG
28plt.savefig("chart-size.svg", format="svg")
diff --git a/static/posts/dna-sequence/chart-size.svg b/static/posts/dna-sequence/chart-size.svg
new file mode 100644
index 0000000..1a2d127
--- /dev/null
+++ b/static/posts/dna-sequence/chart-size.svg
@@ -0,0 +1,1553 @@
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diff --git a/static/posts/dna-sequence/chart-speed.py b/static/posts/dna-sequence/chart-speed.py
new file mode 100644
index 0000000..c07b057
--- /dev/null
+++ b/static/posts/dna-sequence/chart-speed.py
@@ -0,0 +1,23 @@
1import csv
2
3import matplotlib.pyplot as plt
4import pandas as pd
5
6# Read the data
7df = pd.read_csv("benchmarks.csv")
8
9# Settings
10plt.title("Encode to FASTA speed over time")
11plt.tight_layout(pad=2)
12fig = plt.gcf()
13fig.set_size_inches(10, 4)
14
15# Plotting
16plt.plot(df["Packages"], df["Encode to FASTA (ms)"], label = "ALB", color="black", linestyle="--")
17
18# Adding x and y axis labels
19plt.xlabel("Size of an input file", fontstyle="italic")
20plt.ylabel("Encoding time (ms)", fontstyle="italic")
21
22# Export as SVG
23plt.savefig("chart-speed.svg", format="svg")
diff --git a/static/posts/dna-sequence/chart-speed.svg b/static/posts/dna-sequence/chart-speed.svg
new file mode 100644
index 0000000..7bb0c29
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