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authorMitja Felicijan <mitja.felicijan@gmail.com>2022-06-28 19:02:56 +0200
committerMitja Felicijan <mitja.felicijan@gmail.com>2022-06-28 19:02:56 +0200
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treed31f1d1de59e44a903883151807d9ae2efb23764 /posts/2019-01-03-encoding-binary-data-into-dna-sequence.md
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@@ -147,7 +147,7 @@ In bioinformatics, FASTA format is a text-based format for representing either n
147 147
148The first line in a FASTA file started either with a ">" (greater-than) symbol or, less frequently, a ";" (semicolon) was taken as a comment. Subsequent lines starting with a semicolon would be ignored by software. Since the only comment used was the first, it quickly became used to hold a summary description of the sequence, often starting with a unique library accession number, and with time it has become commonplace to always use ">" for the first line and to not use ";" comments (which would otherwise be ignored). 148The first line in a FASTA file started either with a ">" (greater-than) symbol or, less frequently, a ";" (semicolon) was taken as a comment. Subsequent lines starting with a semicolon would be ignored by software. Since the only comment used was the first, it quickly became used to hold a summary description of the sequence, often starting with a unique library accession number, and with time it has become commonplace to always use ">" for the first line and to not use ";" comments (which would otherwise be ignored).
149 149
150```text 150```
151;LCBO - Prolactin precursor - Bovine 151;LCBO - Prolactin precursor - Bovine
152; a sample sequence in FASTA format 152; a sample sequence in FASTA format
153MDSKGSSQKGSRLLLLLVVSNLLLCQGVVSTPVCPNGPGNCQVSLRDLFDRAVMVSHYIHDLSS 153MDSKGSSQKGSRLLLLLVVSNLLLCQGVVSTPVCPNGPGNCQVSLRDLFDRAVMVSHYIHDLSS
@@ -220,7 +220,7 @@ First we encode text file into FASTA file.
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221Output of `quote.fa` file contains the encoded DNA sequence in ASCII format. 221Output of `quote.fa` file contains the encoded DNA sequence in ASCII format.
222 222
223```text 223```
224>SEQ1 224>SEQ1
225GACAGCTTGTGTACAAGTGTGCTTGCTCGCGAGCGGGTACGCGCGTGGGCTAACAAGTGA 225GACAGCTTGTGTACAAGTGTGCTTGCTCGCGAGCGGGTACGCGCGTGGGCTAACAAGTGA
226GCCAGCAGGTGAACAAGTGTGCGGACAAGCCAGCAGGTGCGCGGACAAGCTGGCGGGTGA 226GCCAGCAGGTGAACAAGTGTGCGGACAAGCCAGCAGGTGCGCGGACAAGCTGGCGGGTGA